To solve the problem of lack of agility when command and control (C2) organization makes resource scheduling in complex and changeable battlefield environment. The Holonic control system method to design C2 organization is introduced and the resource scheduling methods of Holonic-C2 organization is analyzed. Firstly, the concept of the basic Holon unit in C2 based on Holonic theory is defined. The structure of Holonic-C2 organization is given. Then, the decision authority of Holonic-C2 organization is analyzed and the dividing method of decision modes is given. Finally, the resource scheduling methods in different decision mode are studied and the dynamic scheduling methods solve the uncertainty emergency. The resource scheduling and adjustment methods are designed based on the centralized and cooperating decision model.